STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrdATransferase. (177 aa)    
Predicted Functional Partners:
gor
Glutathione reductase.
       0.792
cynT_2
Inorganic transporter and to carbonic anhydrase (bi-functional).
   
 0.787
cynT_3
Carbonic anhydrase.
    
 0.775
cynT_1
Carbonic anhydrase.
    
 0.775
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
    
  0.653
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.584
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
   
 
 0.429
arnB
Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
    
  0.426
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.