STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_1D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (596 aa)    
Predicted Functional Partners:
ldcA
Muramoyltetrapeptide carboxypeptidase.
 
  
  0.805
Lcin_1723
LD-carboxypeptidase.
 
  
  0.803
Lcin_1327
Enhanced entry protein EnhA.
  
  
  0.750
Lcin_3004
Hypothetical protein.
 
  
  0.737
Lcin_1369
Hypothetical protein.
  
  
  0.730
enhA_3
Enhanced entry protein EnhA.
  
  
  0.728
Lcin_2840
Enhanced entry protein EnhA.
  
  
  0.716
enhA_1
Enhanced entry protein EnhA.
  
  
  0.710
parB_3
Partition protein ParB; Belongs to the ParB family.
       0.678
rodA
Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.674
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.