dacB_1 protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dacB_1

D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (596 aa)

Predicted Functional Partners:

Lcin_1723

0.957

Lcin_1327

0.944

enhA_3

0.939

Lcin_1369

0.939

Lcin_2840

0.936

enhA_1

0.935

ldcA

0.882

ftsI

0.880

dacA

0.880

mrdA

0.878

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_1327	dacB_1	Lcin_1327	Lcin_1832	Enhanced entry protein EnhA.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.	0.944
Lcin_1327	ftsI	Lcin_1327	Lcin_1374	Enhanced entry protein EnhA.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.414
Lcin_1327	mrdA	Lcin_1327	Lcin_0378	Enhanced entry protein EnhA.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.926
Lcin_1369	dacB_1	Lcin_1369	Lcin_1832	Hypothetical protein.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.	0.939
Lcin_1369	ftsI	Lcin_1369	Lcin_1374	Hypothetical protein.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.461
Lcin_1369	mrdA	Lcin_1369	Lcin_0378	Hypothetical protein.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.926
Lcin_1723	dacA	Lcin_1723	Lcin_3262	LD-carboxypeptidase.	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	0.643
Lcin_1723	dacB_1	Lcin_1723	Lcin_1832	LD-carboxypeptidase.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.	0.957
Lcin_1723	ftsI	Lcin_1723	Lcin_1374	LD-carboxypeptidase.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.498
Lcin_1723	mrdA	Lcin_1723	Lcin_0378	LD-carboxypeptidase.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.868
Lcin_2840	dacA	Lcin_2840	Lcin_3262	Enhanced entry protein EnhA.	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	0.500
Lcin_2840	dacB_1	Lcin_2840	Lcin_1832	Enhanced entry protein EnhA.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.	0.936
Lcin_2840	ftsI	Lcin_2840	Lcin_1374	Enhanced entry protein EnhA.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.546
Lcin_2840	mrdA	Lcin_2840	Lcin_0378	Enhanced entry protein EnhA.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.926
dacA	Lcin_1723	Lcin_3262	Lcin_1723	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	LD-carboxypeptidase.	0.643
dacA	Lcin_2840	Lcin_3262	Lcin_2840	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	Enhanced entry protein EnhA.	0.500
dacA	dacB_1	Lcin_3262	Lcin_1832	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.	0.880
dacA	enhA_1	Lcin_3262	Lcin_0368	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	Enhanced entry protein EnhA.	0.753
dacA	enhA_3	Lcin_3262	Lcin_0571	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	Enhanced entry protein EnhA.	0.500
dacA	ftsI	Lcin_3262	Lcin_1374	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.905