Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acpP_1-2Acyl carrier protein. (75 aa)    
Predicted Functional Partners:
tycC_2
Non-ribosomal peptide synthase.
  
 0.948
fabD_2
Malonyl CoA-ACP transacylase.
  
 0.913
pksN
Peptide synthetase, non-ribosomal.
  
 
 0.878
acpP_1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.848
bcr_1
Multidrug resistance protein.
       0.834
Lcin_1849
acyl-CoA synthetase.
 
 0.824
Lcin_0503
Saframycin Mx1 synthetase B.
  
 0.823
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
 0.816
tycC_1
Peptide synthetase, non-ribosomal.
  
 
 0.782
Lcin_1761
Putative lipase.
  
 
  0.769
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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