Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein ComF. (206 aa)    
Predicted Functional Partners:
smf
Protein smf.
 
 
 0.905
Lcin_2059
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.892
yifB
Bifunctional enzyme and transcriptional regulator.
 
  
 0.861
purD
Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
     
  0.793
bioC
Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
 
   
 0.740
Lcin_1058
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.695
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.676
gmr_3
Regulatory protein (GGDEF domain).
  
  
 0.669
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase.
  
    0.660
tagH
ABC transporter of LPS O-antigen.
   
    0.647
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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