STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein ComF. (206 aa)    
Predicted Functional Partners:
smf
Protein smf.
 
 
 0.924
Lcin_2059
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.860
yifB
Bifunctional enzyme and transcriptional regulator.
 
  
 0.816
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.796
gmr_3
Regulatory protein (GGDEF domain).
  
  
 0.747
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
  0.702
Lcin_1058
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.701
luxQ
Sensor histidine kinase.
  
  
 0.656
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase.
  
    0.644
bioC
Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
 
  
 0.628
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.