Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yahKZinc-type alcohol dehydrogenase-like protein. (348 aa)    
Predicted Functional Partners:
frmA
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.914
mdh_1
Alcohol dehydrogenase.
  
 0.874
Lcin_0268
Alcohol dehydrogenase.
  
  
 
0.873
pdc
Pyruvate decarboxylase.
   
 
 0.868
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.861
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
     
 0.852
budB
Acetolactate synthase; Belongs to the TPP enzyme family.
    
 0.631
rne
Ribonuclease E.
       0.630
rkpA
Type I polyketide synthase WcbR.
   
 0.612
gfo
Oxidoreductase.
    
 0.588
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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