STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1919GH3 auxin-responsive promoter. (508 aa)    
Predicted Functional Partners:
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
  
  0.906
Lcin_1918
acyl-CoA dehydrogenase.
 
  
  0.821
Lcin_1157
Calcium-transporting ATPase.
  
     0.761
Lcin_2152
Hypothetical protein.
  
     0.748
bcp
Acetylpolyamine aminohydrolase.
  
     0.746
Lcin_2218
Hypothetical protein.
  
     0.740
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.734
Lcin_1019
Putative secreted esterase.
  
     0.733
pieE_1
Substrate of the Dot/Icm secretion system.
  
     0.728
Lcin_2804
Ankyrin repeat protein.
  
     0.727
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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