Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hopD2Tyrosine phosphatase II superfamily protein. (320 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
   
 0.964
yjeA
Endo-1,4-beta-xylanase.
  
 0.853
Lcin_0492
Protein phosphatase 2C.
  
 
 
 0.833
Lcin_2476
Ankyrin repeat protein.
  
 
 0.829
bcp
Acetylpolyamine aminohydrolase.
  
 
 
 0.817
Lcin_1930
Transmembrane protein.
       0.791
Lcin_2804
Ankyrin repeat protein.
  
 
  0.788
Lcin_1929
Transmembrane protein.
       0.781
Lcin_1157
Calcium-transporting ATPase.
  
 
   0.775
Lcin_1761
Putative lipase.
 
  
 0.739
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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