STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC_5Poly-beta-hydroxybutyrate synthase. (580 aa)    
Predicted Functional Partners:
pta
Phosphate acetyl/butaryl transferase.
 
 0.867
Lcin_2220
Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.854
fabG_3
3-oxoacyl-ACP reductase.
  
 
  0.785
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.782
fabG_2
3-oxoacyl-ACP reductase.
  
 
  0.742
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.698
yfcX
Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.698
csgA
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.629
Lcin_2167
Alpha/beta hydrolase.
  
  
  0.614
Lcin_3244
Phospholipase, patatin family.
  
     0.573
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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