Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
add_1 | add_2 | Lcin_1965 | Lcin_2809 | Adenosine deaminase. | Adenosine deaminase. | 0.590 |
add_1 | gad | Lcin_1965 | Lcin_2132 | Adenosine deaminase. | Guanine aminohydrolase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. | 0.613 |
add_1 | hpt | Lcin_1965 | Lcin_0249 | Adenosine deaminase. | Pyrimidine phosphoribosyl transferase. | 0.628 |
add_1 | iolCB | Lcin_1965 | Lcin_2955 | Adenosine deaminase. | IolC/IolB transferase kinase protein. | 0.670 |
add_1 | psuK | Lcin_1965 | Lcin_1714 | Adenosine deaminase. | Carbohydrate kinase, pfkB family. | 0.652 |
add_1 | purA | Lcin_1965 | Lcin_2808 | Adenosine deaminase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.521 |
add_1 | rihA | Lcin_1965 | Lcin_2348 | Adenosine deaminase. | Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family. | 0.524 |
add_1 | surE | Lcin_1965 | Lcin_2484 | Adenosine deaminase. | Acid phosphatase SurE (Stationary phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.594 |
add_1 | xapA | Lcin_1965 | Lcin_3281 | Adenosine deaminase. | Xanthosine phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.759 |
add_1 | yjjG | Lcin_1965 | Lcin_0255 | Adenosine deaminase. | Haloacid dehalogenase. | 0.680 |
add_2 | add_1 | Lcin_2809 | Lcin_1965 | Adenosine deaminase. | Adenosine deaminase. | 0.590 |
add_2 | gad | Lcin_2809 | Lcin_2132 | Adenosine deaminase. | Guanine aminohydrolase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. | 0.459 |
add_2 | hpt | Lcin_2809 | Lcin_0249 | Adenosine deaminase. | Pyrimidine phosphoribosyl transferase. | 0.628 |
add_2 | iolCB | Lcin_2809 | Lcin_2955 | Adenosine deaminase. | IolC/IolB transferase kinase protein. | 0.599 |
add_2 | psuK | Lcin_2809 | Lcin_1714 | Adenosine deaminase. | Carbohydrate kinase, pfkB family. | 0.599 |
add_2 | purA | Lcin_2809 | Lcin_2808 | Adenosine deaminase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.521 |
add_2 | rihA | Lcin_2809 | Lcin_2348 | Adenosine deaminase. | Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family. | 0.449 |
add_2 | surE | Lcin_2809 | Lcin_2484 | Adenosine deaminase. | Acid phosphatase SurE (Stationary phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.594 |
add_2 | xapA | Lcin_2809 | Lcin_3281 | Adenosine deaminase. | Xanthosine phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.725 |
add_2 | yjjG | Lcin_2809 | Lcin_0255 | Adenosine deaminase. | Haloacid dehalogenase. | 0.613 |
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