Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Lcin_1989Phage shock protein C, PspC. (72 aa)    
Predicted Functional Partners:
arcB_4
Sensory box histidine kinase/response regulator.
   
 
 0.911
arcB_1
Sensory histidine-kinase / response regulator.
   
 
 0.911
evgS_2
Sensor histidine kinase.
  
 
 0.870
letS
Legionella transmission sensor LetS.
   
 
 0.841
gltT
Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.840
Lcin_1990
Hypothetical protein.
       0.794
Lcin_1987
Hypothetical protein.
       0.560
Lcin_3402
LuxR family transcriptional regulator.
    
 
 0.538
arcB_3
Response regulator.
    
   0.513
arcB_2
Sensory box sensor histidine kinase/response regulator.
   
   0.504
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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