Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1998Protein IcmB (DotO). (1009 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
 
 0.964
Lcin_1999
IcmJ protein.
 
     0.958
Lcin_2004
IcmK protein.
 
   
 0.912
Lcin_2005
Protein IcmL (DotI).
 
   
 0.912
Lcin_2009
IcmP protein.
 
   
 0.866
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.825
Lcin_2008
Protein IcmO (DotL).
 
  
 0.815
dotA_1
Hypothetical protein.
  
     0.757
enhA_1
Enhanced entry protein EnhA.
  
     0.734
ankH_1
Ankyrin repeat-containing protein H.
  
   
 0.716
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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