STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2001IcmC (DotE). (192 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
     
 0.866
icmD_5
IcmD (DotP).
     
 0.863
dotF
Component of the Dot/Icm secretion system.
     
 0.862
Lcin_2004
IcmK protein.
     
 0.854
Lcin_2005
Protein IcmL (DotI).
     
 0.795
icmM
IcmM (DotJ).
     
 0.759
lphA
LphA (DotK).
       0.721
Lcin_1999
IcmJ protein.
     
 0.651
Lcin_1998
Protein IcmB (DotO).
       0.631
Lcin_2009
IcmP protein.
     
 0.481
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.