Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2009IcmP protein. (377 aa)    
Predicted Functional Partners:
Lcin_2008
Protein IcmO (DotL).
 
 
 
 0.996
Lcin_1999
IcmJ protein.
 
 
 
 0.983
Lcin_0313
Hypothetical protein.
    
   0.885
Lcin_2004
IcmK protein.
 
   
 0.882
Lcin_2005
Protein IcmL (DotI).
 
   
 0.875
Lcin_1998
Protein IcmB (DotO).
 
   
 0.866
Lcin_2010
IcmQ protein.
     
 0.832
dotC
Defect in organelle trafficking lipoprotein DotC.
 
   
 0.815
ankH_1
Ankyrin repeat-containing protein H.
  
   
 0.789
Lcin_1728
Substrate of the Dot/Icm secretion system.
    
   0.787
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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