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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2012Protein IcmS. (114 aa)    
Predicted Functional Partners:
Lcin_2008
Protein IcmO (DotL).
   
 
 0.904
icmW
Intracellular multiplication protein IcmW.
    
 
 0.890
lvgA
Virulence protein LvgA.
    
 
 0.871
Lcin_2013
IcmT protein.
       0.792
Lcin_0151
Conjugative coupling factor TraD.
   
 
 0.697
traD_3
Conjugative transfer protein TraD.
   
 
 0.697
traD_2
Conjugative transfer protein TraD.
   
 
 0.697
Lcin_3287
Phospholipase, patatin family.
    
   0.691
ligB
LigB protein (part of the Dot/Icm secretion system).
       0.522
Lcin_1161
Patatin-like phospholipase.
    
   0.506
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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