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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilE_1Type-IV pilin. (139 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
  
 0.828
pilP
Tfp pilus assembly protein PilP.
  
  
 0.819
pilO
Tfp pilus assembly protein PilO.
 
   
 0.813
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.798
pilE_2
Tfp pilus assembly protein, major type IV pilin class A; Belongs to the N-Me-Phe pilin family.
 
  
 0.798
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.793
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.720
Lcin_2161
Hypothetical protein.
  
  
 0.713
pilF
Twitching motility protein PilF.
  
   
 0.648
lspG
Type II secretory pathway protein LspG.
    
 0.616
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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