Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2158Polysaccharide deacetylase. (295 aa)    
Predicted Functional Partners:
Lcin_1387
Dolichyl-phosphate mannosyltransferase.
  
 
 0.676
dotG
IcmE/DotG protein.
  
     0.669
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.648
Lcin_1327
Enhanced entry protein EnhA.
  
     0.608
Lcin_1966
Transmembrane protein.
  
     0.582
dotA_2
Hypothetical protein.
  
     0.578
Lcin_1999
IcmJ protein.
  
     0.565
Lcin_0399
Hypothetical protein.
  
     0.562
Lcin_1163
Putative virulence protein.
  
     0.560
ankH_1
Ankyrin repeat-containing protein H.
  
     0.555
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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