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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2162Hypothetical protein. (105 aa)    
Predicted Functional Partners:
lspJ
Type II secretory pathway protein LspJ.
  
 0.848
Lcin_2161
Hypothetical protein.
  
  
 0.799
Lcin_2160
Hypothetical protein.
       0.792
lspK
Type II secretory pathway protein LspK.
  
 
 0.765
pilB
Pilus assembly protein PilB.
   
 0.681
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
   
 0.681
pilC
Pilus assembly protein PilC.
   
  
 0.554
lspF
Type II secretory pathway protein LspF.
   
  
 0.554
Lcin_2059
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.509
mltA_1
Membrane-bound lytic murein transglycosylase; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.484
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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