STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2164Pterin-4-alpha-carbinolamine dehydratase. (113 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase.
  
 0.991
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.836
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
     
 0.816
lly
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.797
Lcin_2160
Hypothetical protein.
       0.625
Lcin_2161
Hypothetical protein.
       0.625
Lcin_2162
Hypothetical protein.
       0.625
hmgA
Homogentisate 1,2-dioxygenase.
  
  
 0.578
rkpA
Type I polyketide synthase WcbR.
 
 
 0.530
dmpP
ferredoxin-NADP reductase.
     
 0.493
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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