Lcin_2230 protein (Legionella cincinnatiensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Lcin_2230

Lipase LipB. (305 aa)

Predicted Functional Partners:

tycC_2

0.708

aas

0.634

Lcin_1849

0.614

tycC_1

0.569

Lcin_2231

0.559

wbbL

0.544

Lcin_0503

0.489

pksN

0.452

msrA_2

0.430

Lcin_1831

0.424

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_0503	Lcin_1849	Lcin_0503	Lcin_1849	Saframycin Mx1 synthetase B.	acyl-CoA synthetase.	0.997
Lcin_0503	Lcin_2230	Lcin_0503	Lcin_2230	Saframycin Mx1 synthetase B.	Lipase LipB.	0.489
Lcin_0503	aas	Lcin_0503	Lcin_1951	Saframycin Mx1 synthetase B.	Fused 2-acylglycerophospho-ethanolamine acyl transferase, acyl-acyl carrier protein synthetase.	0.968
Lcin_0503	pksN	Lcin_0503	Lcin_2133	Saframycin Mx1 synthetase B.	Peptide synthetase, non-ribosomal.	0.991
Lcin_0503	tycC_1	Lcin_0503	Lcin_2134	Saframycin Mx1 synthetase B.	Peptide synthetase, non-ribosomal.	0.999
Lcin_0503	tycC_2	Lcin_0503	Lcin_1179	Saframycin Mx1 synthetase B.	Non-ribosomal peptide synthase.	0.999
Lcin_1831	Lcin_2230	Lcin_1831	Lcin_2230	Sphingomyelin phosphodiesterase.	Lipase LipB.	0.424
Lcin_1849	Lcin_0503	Lcin_1849	Lcin_0503	acyl-CoA synthetase.	Saframycin Mx1 synthetase B.	0.997
Lcin_1849	Lcin_2230	Lcin_1849	Lcin_2230	acyl-CoA synthetase.	Lipase LipB.	0.614
Lcin_1849	aas	Lcin_1849	Lcin_1951	acyl-CoA synthetase.	Fused 2-acylglycerophospho-ethanolamine acyl transferase, acyl-acyl carrier protein synthetase.	0.965
Lcin_1849	pksN	Lcin_1849	Lcin_2133	acyl-CoA synthetase.	Peptide synthetase, non-ribosomal.	0.999
Lcin_1849	tycC_1	Lcin_1849	Lcin_2134	acyl-CoA synthetase.	Peptide synthetase, non-ribosomal.	0.999
Lcin_1849	tycC_2	Lcin_1849	Lcin_1179	acyl-CoA synthetase.	Non-ribosomal peptide synthase.	0.999
Lcin_1849	wbbL	Lcin_1849	Lcin_0496	acyl-CoA synthetase.	Putative glycosyl transferase.	0.803
Lcin_2230	Lcin_0503	Lcin_2230	Lcin_0503	Lipase LipB.	Saframycin Mx1 synthetase B.	0.489
Lcin_2230	Lcin_1831	Lcin_2230	Lcin_1831	Lipase LipB.	Sphingomyelin phosphodiesterase.	0.424
Lcin_2230	Lcin_1849	Lcin_2230	Lcin_1849	Lipase LipB.	acyl-CoA synthetase.	0.614
Lcin_2230	Lcin_2231	Lcin_2230	Lcin_2231	Lipase LipB.	Hypothetical protein.	0.559
Lcin_2230	aas	Lcin_2230	Lcin_1951	Lipase LipB.	Fused 2-acylglycerophospho-ethanolamine acyl transferase, acyl-acyl carrier protein synthetase.	0.634
Lcin_2230	msrA_2	Lcin_2230	Lcin_0925	Lipase LipB.	Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.430