STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2236Bleomycin resistance protein. (122 aa)    
Predicted Functional Partners:
niaR
Transcriptional regulator.
 
     0.762
xylA
Xylene monooxygenase.
   
 
 0.702
rkpA
Type I polyketide synthase WcbR.
  
 0.640
nuoI
NADH-quinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
  0.601
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.594
aidB
acyl-CoA dehydrogenase.
    
  0.536
Lcin_2235
Hypothetical protein.
    
  0.519
attM
Zn-dependent hydrolase GumP.
  
 
 0.460
mdh_1
Alcohol dehydrogenase.
  
 
 0.454
frmC
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
  0.441
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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