STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crp_2Sulfate permease with a cNMP binding motif protein. (731 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
   
 0.913
rkpA
Type I polyketide synthase WcbR.
  
 0.873
putA
Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.857
pksM
Polyketide synthase.
    
 0.855
Lcin_2476
Ankyrin repeat protein.
    
 0.854
apc3
Acetophenone carboxylase gamma subunit.
     
  0.850
cyaB
Guanylate/adenylate cyclase.
  
 0.811
evgS_2
Sensor histidine kinase.
 
 
 0.757
cyaA_1
Guanylate cyclase.
 
 
 0.750
cyaA_3
Adenylate cyclase.
   
 0.720
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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