Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lcin_2273Ankyrin repeat protein. (173 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
    
  0.834
rkpA
Type I polyketide synthase WcbR.
    
 0.743
Lcin_3156
Ankyrin repeat protein.
  
     0.655
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.619
Lcin_0492
Protein phosphatase 2C.
  
 
   0.583
Lcin_0284
Ankyrin repeat protein.
  
     0.536
Lcin_3426
Putative protoheme IX biogenesis protein.
  
 
  0.499
Lcin_2619
Ras family GTPase.
  
 
  0.482
Lcin_3215
Rho GTPase (Miro-like).
  
 
  0.477
Lcin_0095
PPR repeat protein.
   
  0.475
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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