dap protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

dap

Beta-lactamase. (356 aa)

Predicted Functional Partners:

yojI

0.693

ftsI

0.621

mrcA

0.594

ybbD_2

0.577

amiB

0.565

Lcin_1723

0.560

ldcA

0.555

rodA

0.552

pbpC

0.544

ybbD_1

0.543

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_1723	amiB	Lcin_1723	Lcin_0707	LD-carboxypeptidase.	N-acetylmuramoyl-L-alanine amidase.	0.758
Lcin_1723	dap	Lcin_1723	Lcin_2283	LD-carboxypeptidase.	Beta-lactamase.	0.560
Lcin_1723	ftsI	Lcin_1723	Lcin_1374	LD-carboxypeptidase.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.498
Lcin_1723	mrcA	Lcin_1723	Lcin_1389	LD-carboxypeptidase.	Putative peptidoglycan synthetase, penicillin-binding protein 1A.	0.643
Lcin_1723	ybbD_1	Lcin_1723	Lcin_2257	LD-carboxypeptidase.	Glycosyl hydrolase.	0.557
Lcin_1723	ybbD_2	Lcin_1723	Lcin_2451	LD-carboxypeptidase.	N-acetyl-beta-glucosaminidase.	0.566
amiB	Lcin_1723	Lcin_0707	Lcin_1723	N-acetylmuramoyl-L-alanine amidase.	LD-carboxypeptidase.	0.758
amiB	dap	Lcin_0707	Lcin_2283	N-acetylmuramoyl-L-alanine amidase.	Beta-lactamase.	0.565
amiB	ftsI	Lcin_0707	Lcin_1374	N-acetylmuramoyl-L-alanine amidase.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.445
amiB	ldcA	Lcin_0707	Lcin_2902	N-acetylmuramoyl-L-alanine amidase.	Muramoyltetrapeptide carboxypeptidase.	0.758
amiB	ybbD_1	Lcin_0707	Lcin_2257	N-acetylmuramoyl-L-alanine amidase.	Glycosyl hydrolase.	0.754
amiB	ybbD_2	Lcin_0707	Lcin_2451	N-acetylmuramoyl-L-alanine amidase.	N-acetyl-beta-glucosaminidase.	0.754
dap	Lcin_1723	Lcin_2283	Lcin_1723	Beta-lactamase.	LD-carboxypeptidase.	0.560
dap	amiB	Lcin_2283	Lcin_0707	Beta-lactamase.	N-acetylmuramoyl-L-alanine amidase.	0.565
dap	ftsI	Lcin_2283	Lcin_1374	Beta-lactamase.	Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.621
dap	ldcA	Lcin_2283	Lcin_2902	Beta-lactamase.	Muramoyltetrapeptide carboxypeptidase.	0.555
dap	mrcA	Lcin_2283	Lcin_1389	Beta-lactamase.	Putative peptidoglycan synthetase, penicillin-binding protein 1A.	0.594
dap	pbpC	Lcin_2283	Lcin_0235	Beta-lactamase.	Penicillin binding protein 1C.	0.544
dap	rodA	Lcin_2283	Lcin_0379	Beta-lactamase.	Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.552
dap	ybbD_1	Lcin_2283	Lcin_2257	Beta-lactamase.	Glycosyl hydrolase.	0.543