Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lcin_0503 | Lcin_1849 | Lcin_0503 | Lcin_1849 | Saframycin Mx1 synthetase B. | acyl-CoA synthetase. | 0.999 |
| Lcin_0503 | Lcin_2322 | Lcin_0503 | Lcin_2322 | Saframycin Mx1 synthetase B. | Acyltransferase. | 0.839 |
| Lcin_0503 | arcB_1 | Lcin_0503 | Lcin_2288 | Saframycin Mx1 synthetase B. | Sensory histidine-kinase / response regulator. | 0.833 |
| Lcin_0503 | arcB_4 | Lcin_0503 | Lcin_1051 | Saframycin Mx1 synthetase B. | Sensory box histidine kinase/response regulator. | 0.833 |
| Lcin_0503 | cdsA | Lcin_0503 | Lcin_2818 | Saframycin Mx1 synthetase B. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.705 |
| Lcin_0503 | pksM | Lcin_0503 | Lcin_2790 | Saframycin Mx1 synthetase B. | Polyketide synthase. | 0.980 |
| Lcin_0503 | plsY | Lcin_0503 | Lcin_1212 | Saframycin Mx1 synthetase B. | Transmembrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.765 |
| Lcin_0503 | rkpA | Lcin_0503 | Lcin_0960 | Saframycin Mx1 synthetase B. | Type I polyketide synthase WcbR. | 0.988 |
| Lcin_0503 | rssA | Lcin_0503 | Lcin_2906 | Saframycin Mx1 synthetase B. | Patatin-like phospholipase. | 0.545 |
| Lcin_0503 | tycC_2 | Lcin_0503 | Lcin_1179 | Saframycin Mx1 synthetase B. | Non-ribosomal peptide synthase. | 0.999 |
| Lcin_1849 | Lcin_0503 | Lcin_1849 | Lcin_0503 | acyl-CoA synthetase. | Saframycin Mx1 synthetase B. | 0.999 |
| Lcin_1849 | Lcin_2322 | Lcin_1849 | Lcin_2322 | acyl-CoA synthetase. | Acyltransferase. | 0.833 |
| Lcin_1849 | arcB_1 | Lcin_1849 | Lcin_2288 | acyl-CoA synthetase. | Sensory histidine-kinase / response regulator. | 0.836 |
| Lcin_1849 | arcB_4 | Lcin_1849 | Lcin_1051 | acyl-CoA synthetase. | Sensory box histidine kinase/response regulator. | 0.836 |
| Lcin_1849 | cdsA | Lcin_1849 | Lcin_2818 | acyl-CoA synthetase. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.696 |
| Lcin_1849 | pksM | Lcin_1849 | Lcin_2790 | acyl-CoA synthetase. | Polyketide synthase. | 0.999 |
| Lcin_1849 | plsY | Lcin_1849 | Lcin_1212 | acyl-CoA synthetase. | Transmembrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.741 |
| Lcin_1849 | rkpA | Lcin_1849 | Lcin_0960 | acyl-CoA synthetase. | Type I polyketide synthase WcbR. | 0.999 |
| Lcin_1849 | rssA | Lcin_1849 | Lcin_2906 | acyl-CoA synthetase. | Patatin-like phospholipase. | 0.723 |
| Lcin_1849 | tycC_2 | Lcin_1849 | Lcin_1179 | acyl-CoA synthetase. | Non-ribosomal peptide synthase. | 0.999 |
page 1 of 5