Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tyrP_2Tyrosine-specific transport protein. (397 aa)    
Predicted Functional Partners:
yiaD
Lipoprotein.
       0.834
Lcin_1999
IcmJ protein.
  
     0.569
tyrP_1
Tyrosine-specific transport protein.
 
    
0.537
Lcin_2008
Protein IcmO (DotL).
  
     0.517
Lcin_2005
Protein IcmL (DotI).
  
     0.509
dotA_1
Hypothetical protein.
  
 
   0.500
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.499
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
   0.485
Lcin_1327
Enhanced entry protein EnhA.
  
     0.469
Lcin_1369
Hypothetical protein.
  
     0.469
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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