STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proP_2Major facilitator family transporter. (425 aa)    
Predicted Functional Partners:
rihA
Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
       0.792
xylA
Xylene monooxygenase.
  
  
 0.783
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.752
hspA_1
Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.
  
    0.524
Lcin_2350
Phytanoyl-CoA dioxygenase.
       0.511
shiA
Shikimate transporter.
  
  
0.442
trxB
Thioredoxin reductase.
     
 0.441
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
    
 0.439
Lcin_3428
CMP-N-acetylneuraminate monooxygenase.
  
 
 0.412
proP_1
Proline/betaine transporter ProP6.
  
  
 
0.408
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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