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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2350Phytanoyl-CoA dioxygenase. (282 aa)    
Predicted Functional Partners:
rihA
Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
 
    0.566
tycC_2
Non-ribosomal peptide synthase.
  
  
 0.515
proP_2
Major facilitator family transporter.
       0.511
Lcin_0432
Cupin domain protein.
    
 0.501
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.495
pepP
Proline aminopeptidase P II.
     
 0.459
rkpA
Type I polyketide synthase WcbR.
  
 0.452
Lcin_2351
Hypothetical protein.
       0.452
tycC_1
Peptide synthetase, non-ribosomal.
  
  
 0.443
pksN
Peptide synthetase, non-ribosomal.
  
  
 0.437
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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