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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2428Leucine carboxyl methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity. (300 aa)    
Predicted Functional Partners:
Lcin_2427
Hydrolase.
 
     0.797
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
     
 0.714
Lcin_2740
Oxidoreductase.
  
  
  0.513
Lcin_0503
Saframycin Mx1 synthetase B.
  
   
 0.484
rkpA
Type I polyketide synthase WcbR.
 
   
 0.479
Lcin_1849
acyl-CoA synthetase.
  
   
 0.476
pksM
Polyketide synthase.
  
   
 0.474
mntP
Putative manganese efflux pump MntP; Probably functions as a manganese efflux pump.
       0.446
tycC_2
Non-ribosomal peptide synthase.
 
   
 0.442
tycC_1
Peptide synthetase, non-ribosomal.
  
   
 0.437
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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