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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2431Bacterioferritin. (154 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.682
Lcin_3028
D12 class N6 adenine-specific DNA methyltransferase.
     
 0.573
Lcin_2430
Hypothetical protein.
       0.553
Lcin_3390
Hypothetical protein.
  
    0.544
ycdT
Regulatory protein (GGDEF domain).
   
    0.517
cya
Guanylate cyclase.
   
    0.493
cph1
Two-component sensor histidine kinase.
   
    0.493
Lcin_3381
Hypothetical protein.
   
    0.457
Lcin_3385
Hypothetical protein.
   
    0.457
plaC
Lysophospholipase A.
  
     0.443
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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