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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccXAcylphosphatase. (85 aa)    
Predicted Functional Partners:
pta
Phosphate acetyl/butaryl transferase.
    
 0.735
ackA
Acetate kinase (Acetokinase); Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.622
ydiI
Esterase.
       0.588
trxB
Thioredoxin reductase.
    
  0.585
nylA
Amidase; Belongs to the amidase family.
    
  0.575
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.572
aldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.572
Lcin_0415
MerR family regulatory protein.
    
  0.562
gatA_2-2
Amidase.
    
  0.557
gatA_1
aspartyl/glutamyl-tRNA amidotransferase subunit A; Belongs to the amidase family.
    
  0.557
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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