STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2460Integral membrane protein (PIN domain superfamily). (127 aa)    
Predicted Functional Partners:
secA_3
Coiled-coil protein.
  
     0.690
aacA4_2
Aminoglycoside N(6')acetyltransferase.
  
     0.688
Lcin_0984
Coiled-coil protein.
  
     0.676
aacA4_1
Aminoglycoside N(6')acetyltransferase.
  
     0.661
Lcin_3155
Ankyrin repeats (3 copies).
  
     0.644
Lcin_0933
Outer membrane efflux protein.
  
     0.639
Lcin_1761
Putative lipase.
  
     0.639
Lcin_2459
Hypothetical protein.
       0.634
aph
Spectinomycin phosphotransferase.
  
     0.614
Lcin_1637
Fe-S protein.
  
     0.588
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.