Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2470Ankyrin repeat protein. (610 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
    
  0.834
Lcin_1011
Thaumatin domain-containing protein.
  
 
   0.790
Lcin_1599
Pyruvate phosphate dikinase.
 
     0.763
Lcin_1238
Ankyrin repeats (3 copies).
  
     0.760
Lcin_2601
6,7-dimethyl-8-ribityllumazine synthase; Belongs to the DMRL synthase family.
  
 
   0.758
rkpA
Type I polyketide synthase WcbR.
    
 0.743
Lcin_0134
Bile acid beta-glucosidase.
  
 
   0.727
Lcin_0148
Membrane protein.
  
     0.727
Lcin_0146
TraU protein.
  
     0.719
Lcin_0141
Hypothetical protein.
  
     0.717
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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