Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lcin_1594 | amiB | Lcin_1594 | Lcin_0707 | Peptidase family M23. | N-acetylmuramoyl-L-alanine amidase. | 0.708 |
Lcin_1594 | mltD | Lcin_1594 | Lcin_2496 | Peptidase family M23. | Membrane-bound lytic murein transglycosylase D. | 0.684 |
adk | amiB | Lcin_0344 | Lcin_0707 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | N-acetylmuramoyl-L-alanine amidase. | 0.560 |
adk | guaA | Lcin_0344 | Lcin_2940 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.785 |
adk | mltD | Lcin_0344 | Lcin_2496 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Membrane-bound lytic murein transglycosylase D. | 0.673 |
adk | tmk | Lcin_0344 | Lcin_0356 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.795 |
amiB | Lcin_1594 | Lcin_0707 | Lcin_1594 | N-acetylmuramoyl-L-alanine amidase. | Peptidase family M23. | 0.708 |
amiB | adk | Lcin_0707 | Lcin_0344 | N-acetylmuramoyl-L-alanine amidase. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.560 |
amiB | dacA | Lcin_0707 | Lcin_3262 | N-acetylmuramoyl-L-alanine amidase. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | 0.686 |
amiB | dotG | Lcin_0707 | Lcin_2003 | N-acetylmuramoyl-L-alanine amidase. | IcmE/DotG protein. | 0.941 |
amiB | guaA | Lcin_0707 | Lcin_2940 | N-acetylmuramoyl-L-alanine amidase. | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.793 |
amiB | mltD | Lcin_0707 | Lcin_2496 | N-acetylmuramoyl-L-alanine amidase. | Membrane-bound lytic murein transglycosylase D. | 0.816 |
amiB | nagZ | Lcin_0707 | Lcin_0731 | N-acetylmuramoyl-L-alanine amidase. | Beta N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.809 |
amiB | tmk | Lcin_0707 | Lcin_0356 | N-acetylmuramoyl-L-alanine amidase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.502 |
amiB | ybbD_1 | Lcin_0707 | Lcin_2257 | N-acetylmuramoyl-L-alanine amidase. | Glycosyl hydrolase. | 0.809 |
amiB | ybbD_2 | Lcin_0707 | Lcin_2451 | N-acetylmuramoyl-L-alanine amidase. | N-acetyl-beta-glucosaminidase. | 0.809 |
dacA | amiB | Lcin_3262 | Lcin_0707 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | N-acetylmuramoyl-L-alanine amidase. | 0.686 |
dacA | mltD | Lcin_3262 | Lcin_2496 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | Membrane-bound lytic murein transglycosylase D. | 0.780 |
dotG | amiB | Lcin_2003 | Lcin_0707 | IcmE/DotG protein. | N-acetylmuramoyl-L-alanine amidase. | 0.941 |
dotG | mltD | Lcin_2003 | Lcin_2496 | IcmE/DotG protein. | Membrane-bound lytic murein transglycosylase D. | 0.946 |
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