STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vipFHypothetical protein; N-terminal GNAT family acetyltransferase. (297 aa)    
Predicted Functional Partners:
Lcin_1174
Hypothetical protein.
    
   0.674
Lcin_2648
Hypothetical protein.
 
     0.661
dotA_2
Hypothetical protein.
  
     0.554
Lcin_0935
Putative helicase/relaxase.
  
     0.540
IvrA
Hypothetical protein.
  
     0.540
dotG
IcmE/DotG protein.
  
     0.530
Lcin_3155
Ankyrin repeats (3 copies).
  
     0.505
secA_3
Coiled-coil protein.
  
     0.497
Lcin_3199
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.484
ydgA
Putative membrane protein YdgA-like protein.
  
     0.459
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.