Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lcin_2691 | pepP | Lcin_2691 | Lcin_2690 | Hypothetical protein; Belongs to the UPF0149 family. | Proline aminopeptidase P II. | 0.771 |
| Lcin_2691 | ubiH | Lcin_2691 | Lcin_2689 | Hypothetical protein; Belongs to the UPF0149 family. | 2-octaprenyl-6-methoxyphenol hydroxylase. | 0.798 |
| Lcin_2691 | visC | Lcin_2691 | Lcin_2688 | Hypothetical protein; Belongs to the UPF0149 family. | Oxidoreductase with FAD/NAD(P)-binding domain protein. | 0.772 |
| aroB | aroE | Lcin_1397 | Lcin_0793 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.970 |
| aroB | pepP | Lcin_1397 | Lcin_2690 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Proline aminopeptidase P II. | 0.697 |
| aroB | trpE | Lcin_1397 | Lcin_2925 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Anthranilate synthase. | 0.461 |
| aroE | aroB | Lcin_0793 | Lcin_1397 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.970 |
| aroE | pepP | Lcin_0793 | Lcin_2690 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Proline aminopeptidase P II. | 0.697 |
| aroE | trpE | Lcin_0793 | Lcin_2925 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Anthranilate synthase. | 0.846 |
| gcvT | pepP | Lcin_2624 | Lcin_2690 | Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. | Proline aminopeptidase P II. | 0.765 |
| gcvT | xylA | Lcin_2624 | Lcin_1800 | Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. | Xylene monooxygenase. | 0.756 |
| pepO | pepP | Lcin_1971 | Lcin_2690 | Metallopeptidase PepO, peptidase, M13 family. | Proline aminopeptidase P II. | 0.688 |
| pepP | Lcin_2691 | Lcin_2690 | Lcin_2691 | Proline aminopeptidase P II. | Hypothetical protein; Belongs to the UPF0149 family. | 0.771 |
| pepP | aroB | Lcin_2690 | Lcin_1397 | Proline aminopeptidase P II. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.697 |
| pepP | aroE | Lcin_2690 | Lcin_0793 | Proline aminopeptidase P II. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.697 |
| pepP | gcvT | Lcin_2690 | Lcin_2624 | Proline aminopeptidase P II. | Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. | 0.765 |
| pepP | pepO | Lcin_2690 | Lcin_1971 | Proline aminopeptidase P II. | Metallopeptidase PepO, peptidase, M13 family. | 0.688 |
| pepP | trpE | Lcin_2690 | Lcin_2925 | Proline aminopeptidase P II. | Anthranilate synthase. | 0.682 |
| pepP | ubiH | Lcin_2690 | Lcin_2689 | Proline aminopeptidase P II. | 2-octaprenyl-6-methoxyphenol hydroxylase. | 0.849 |
| pepP | ugpA | Lcin_2690 | Lcin_2928 | Proline aminopeptidase P II. | Sn-glycerol-3-phosphate transport system permease protein UgpA. | 0.675 |
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