Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2695Ankyrin repeat protein. (356 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
    
  0.834
rkpA
Type I polyketide synthase WcbR.
  
 
 0.778
Lcin_2293
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.760
Lcin_1228
Substrate of the Dot/Icm secretion system.
  
     0.754
Lcin_0501
Ankyrin repeats (3 copies).
  
     0.750
Lcin_2511
Hypothetical protein.
  
     0.749
Lcin_2309
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.744
Lcin_2086
Ankyrin repeat protein.
  
     0.740
Lcin_1554
Ankyrin repeat-containing protein.
  
     0.734
hemG
Protoporphyrinogen oxidase.
  
     0.725
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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