STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2785Transmembrane protein. (300 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
 
 
   0.873
araC
AraC family transcriptional regulator.
       0.599
Lcin_2784
Hypothetical protein.
       0.592
Lcin_2723
Protein LvrA.
  
     0.583
Lcin_2314
Zinc-iron permease (ZIP) family metal cation transporter.
  
   0.503
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.502
dotA_2
Hypothetical protein.
  
     0.490
IvrA
Hypothetical protein.
  
     0.486
Lcin_3114
Protein-tyrosine phosphatase.
  
     0.482
Lcin_2004
IcmK protein.
  
 
   0.479
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.