Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmpPferredoxin-NADP reductase. (244 aa)    
Predicted Functional Partners:
fda
Fructose-bisphosphate aldolase.
     
 0.836
xylA
Xylene monooxygenase.
 
  
 0.830
putA
Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.718
Lcin_2795
Protein IcmC (DotV)-like protein.
       0.709
fadH
2,4-dienoyl-CoA reductase.
    
 0.668
rkpA
Type I polyketide synthase WcbR.
     
 0.604
Lcin_3412
Metal-sulfur cluster biosynthetic enzyme.
  
 
 0.568
kshA
Rieske 2Fe-2S domain protein.
  
 
 0.560
ascD
NAD(P)H-flavin reductase.
  
  
 0.558
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.538
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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