yhbH protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yhbH

Ribosome-associated, sigma 54 modulation protein. (97 aa)

Predicted Functional Partners:

rpsI

0.963

rpmG

0.963

rpmB

0.963

rpsF

0.963

rpsQ

0.960

rpsC

0.960

rpsO

0.960

rpsB

0.960

rpsR

0.960

rpsA

0.936

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpmG	Lcin_2802	Lcin_2801	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
rpmB	rpsA	Lcin_2802	Lcin_3292	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.981
rpmB	rpsB	Lcin_2802	Lcin_3219	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.994
rpmB	rpsC	Lcin_2802	Lcin_0635	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.990
rpmB	rpsF	Lcin_2802	Lcin_3306	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.996
rpmB	rpsI	Lcin_2802	Lcin_0715	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rpmB	rpsO	Lcin_2802	Lcin_0759	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rpmB	rpsQ	Lcin_2802	Lcin_0632	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.984
rpmB	rpsR	Lcin_2802	Lcin_3305	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.996
rpmB	yhbH	Lcin_2802	Lcin_2799	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Ribosome-associated, sigma 54 modulation protein.	0.963
rpmG	rpmB	Lcin_2801	Lcin_2802	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmG	rpsA	Lcin_2801	Lcin_3292	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.955
rpmG	rpsB	Lcin_2801	Lcin_3219	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.984
rpmG	rpsC	Lcin_2801	Lcin_0635	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.994
rpmG	rpsF	Lcin_2801	Lcin_3306	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rpmG	rpsI	Lcin_2801	Lcin_0715	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.993
rpmG	rpsO	Lcin_2801	Lcin_0759	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rpmG	rpsQ	Lcin_2801	Lcin_0632	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.984
rpmG	rpsR	Lcin_2801	Lcin_3305	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.995
rpmG	yhbH	Lcin_2801	Lcin_2799	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	Ribosome-associated, sigma 54 modulation protein.	0.963