Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Lcin_2804Ankyrin repeat protein. (465 aa)    
Predicted Functional Partners:
bcp
Acetylpolyamine aminohydrolase.
  
 
  0.869
yjeA
Endo-1,4-beta-xylanase.
  
 
  0.849
Lcin_2239
Hypothetical protein.
    
  0.834
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
 
  0.833
Lcin_1831
Sphingomyelin phosphodiesterase.
  
 
   0.809
Lcin_0500
PAP2 superfamily protein.
  
 
   0.797
Lcin_2475
Acid sphingomyelinase-like phosphodiesterase.
  
 
   0.793
Lcin_0794
cNMP-binding protein.
  
 
  0.792
Lcin_1157
Calcium-transporting ATPase.
  
   0.791
hopD2
Tyrosine phosphatase II superfamily protein.
  
 
  0.788
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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