Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lcin_2874 | cefD | Lcin_2874 | Lcin_3159 | Putative iron-sulpher cluster proteins NifU. | Aminotransferase class V. | 0.961 |
| Lcin_2874 | djlA | Lcin_2874 | Lcin_1860 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.962 |
| Lcin_2874 | dnaK | Lcin_2874 | Lcin_2304 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.901 |
| Lcin_2874 | iscS | Lcin_2874 | Lcin_2875 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.998 |
| Lcin_2874 | sufA | Lcin_2874 | Lcin_2873 | Putative iron-sulpher cluster proteins NifU. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.849 |
| Lcin_2874 | sufC | Lcin_2874 | Lcin_3416 | Putative iron-sulpher cluster proteins NifU. | Component of SufBCD complex, ATP-binding component of ABC superfamily. | 0.832 |
| Lcin_2874 | sufD | Lcin_2874 | Lcin_3415 | Putative iron-sulpher cluster proteins NifU. | Component of SufBCD complex. | 0.708 |
| Lcin_2874 | sufS | Lcin_2874 | Lcin_3414 | Putative iron-sulpher cluster proteins NifU. | Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.961 |
| Lcin_2874 | xylA | Lcin_2874 | Lcin_1800 | Putative iron-sulpher cluster proteins NifU. | Xylene monooxygenase. | 0.956 |
| Lcin_2874 | yfhQ | Lcin_2874 | Lcin_2876 | Putative iron-sulpher cluster proteins NifU. | Methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.792 |
| cefD | Lcin_2874 | Lcin_3159 | Lcin_2874 | Aminotransferase class V. | Putative iron-sulpher cluster proteins NifU. | 0.961 |
| cefD | iscS | Lcin_3159 | Lcin_2875 | Aminotransferase class V. | Cysteine desulfurase. | 0.677 |
| cefD | sufA | Lcin_3159 | Lcin_2873 | Aminotransferase class V. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.471 |
| cefD | sufC | Lcin_3159 | Lcin_3416 | Aminotransferase class V. | Component of SufBCD complex, ATP-binding component of ABC superfamily. | 0.826 |
| cefD | sufD | Lcin_3159 | Lcin_3415 | Aminotransferase class V. | Component of SufBCD complex. | 0.761 |
| cefD | sufS | Lcin_3159 | Lcin_3414 | Aminotransferase class V. | Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.435 |
| djlA | Lcin_2874 | Lcin_1860 | Lcin_2874 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Putative iron-sulpher cluster proteins NifU. | 0.962 |
| djlA | dnaK | Lcin_1860 | Lcin_2304 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.975 |
| djlA | iscS | Lcin_1860 | Lcin_2875 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase. | 0.751 |
| djlA | sufA | Lcin_1860 | Lcin_2873 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.770 |
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