STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (408 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase.
 
 
 0.999
argF
Ornithine carbamoyltransferase.
 
 
 0.998
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 
 0.989
argE
Acetylornithine deacetylase.
  
 0.976
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.965
argD
Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 0.959
argR
Arginine repressor ArgR; Regulates arginine biosynthesis genes.
  
  
 0.945
carA
Carbamoyl-phosphate synthetase, glutamine (small subunit); Belongs to the CarA family.
  
 
 0.922
glnQ
ABC transporter ATP-binding protein.
  
  
 0.904
Lcin_2700
Aspartate aminotransferase.
   
 0.889
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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