STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2964Pyoverdine biosynthesis protein. (347 aa)    
Predicted Functional Partners:
Lcin_2975
Pyoverdine biosynthesis protein PvcB.
 
 0.991
Lcin_2976
Pyoverdine biosynthesis protein PvcA.
  
  
 
0.778
Lcin_1696
Prolyl oligopeptidase; Belongs to the UPF0255 family.
  
     0.697
Lcin_0462
Hypothetical protein.
  
     0.695
thi
Thiamine biosynthesis protein NMT-1.
  
     0.658
mhpA
FAD monooxygenase, PheA/TfdB family.
 
     0.637
Lcin_1890
Hypothetical protein.
  
     0.627
Lcin_2606
Coiled-coil protein.
  
     0.564
yaiI
Hypothetical protein; Belongs to the UPF0178 family.
 
     0.544
pvdA
L-ornithine 5-monooxygenase.
  
     0.528
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.