STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_2999NAD dependent epimerase/dehydratase. (957 aa)    
Predicted Functional Partners:
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
  
     0.759
dsbG
NHL repeat protein.
  
     0.743
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
  
     0.743
Lcin_1503
Putative Glutathione synthetase ATP-binding domain-like protein.
  
     0.741
Lcin_1054
Cytochrome P450.
  
     0.702
Lcin_0508
Hypothetical protein.
  
     0.701
Lcin_2966
Regulatory protein, SyrP-like protein.
  
     0.694
sseJ_1
Phospholipase/lecithinase/hemolysin.
  
     0.669
minE
Septum formation topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
  
 0.656
cqsS
Sensor histidine kinase/response regulator.
  
     0.628
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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