Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psf-1Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. (245 aa)    
Predicted Functional Partners:
tycC_2
Non-ribosomal peptide synthase.
 
 0.990
tycC_1
Peptide synthetase, non-ribosomal.
 
 0.987
pksN
Peptide synthetase, non-ribosomal.
 
 0.980
Lcin_1779
Peptide synthetase, non-ribosomal.
 
 0.975
pksJ
Polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.974
rkpA
Type I polyketide synthase WcbR.
 
 0.972
fabD_2
Malonyl CoA-ACP transacylase.
  
 
 0.968
Lcin_2834
Peptide synthetase, non-ribosomal.
 
 0.968
pksM
Polyketide synthase.
 
 0.964
Lcin_1849
acyl-CoA synthetase.
 
 0.956
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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