STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_3113Isochorismatase. (191 aa)    
Predicted Functional Partners:
yecD
Isochorismatase.
  
     0.748
apc3
Acetophenone carboxylase gamma subunit.
    
  0.692
trpE
Anthranilate synthase.
    
 0.627
Lcin_2427
Hydrolase.
  
  0.574
ymfC
23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.503
tycC_2
Non-ribosomal peptide synthase.
   
 
 0.492
soxA
Monomeric sarcosine oxidase.
  
 
  0.488
Lcin_2606
Coiled-coil protein.
  
     0.453
Lcin_3114
Protein-tyrosine phosphatase.
       0.446
araB
L-arabinolactonase.
  
 
  0.445
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.