STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_3170Ankyrin repeats (3 copies). (161 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
    
  0.834
rkpA
Type I polyketide synthase WcbR.
  
 
 0.788
celB
Glycoside hydrolase family 45.
  
     0.548
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
  0.506
Lcin_3171
Hypothetical protein.
       0.503
Lcin_0095
PPR repeat protein.
   
  0.475
Lcin_0579
PPR repeat protein.
   
  0.475
Lcin_0247
Sulfate transporter.
    
  0.457
Lcin_1936
Sulfate permease.
    
  0.457
crp_2
Sulfate permease with a cNMP binding motif protein.
    
  0.457
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.