Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_3224Signal peptide protein. (87 aa)    
Predicted Functional Partners:
Lcin_2908
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.934
Lcin_3250
Hypothetical protein.
 
  
 0.903
Lcin_2909
Hypothetical protein.
 
  
 0.902
Lcin_3249
Hypothetical protein.
 
  
 0.876
yceJ
Cytochrome b561.
       0.712
yceI
Polyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family.
       0.712
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
    0.621
Lcin_2907
Silver efflux pump.
 
     0.533
Lcin_3225
Transmembrane protein (fibronectin III domain and Gp5 C-terminal repeat).
       0.458
Lcin_1998
Protein IcmB (DotO).
  
    0.429
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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