Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_3249Hypothetical protein. (269 aa)    
Predicted Functional Partners:
Lcin_3250
Hypothetical protein.
 
  
 0.988
Lcin_2908
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.934
Lcin_3224
Signal peptide protein.
 
  
 0.876
Lcin_3247
Signal peptide protein.
 
  
 0.854
Lcin_2909
Hypothetical protein.
  
   
 0.786
yceI_2
Putative YceI-like family protein; Belongs to the UPF0312 family.
       0.545
Lcin_2751
GNAT family acetyltransferase.
  
     0.428
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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