STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traI_2Conjugative transfer protein TraI. (986 aa)    
Predicted Functional Partners:
addA
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 0.954
traD_2
Conjugative transfer protein TraD.
 
     0.954
traG
Mating contact stabilization protein TraG.
 
     0.870
Lcin_3330
Conjugative transfer protein TraN.
 
   
 0.859
traH
TraH pilus assembly protein.
 
   
 0.839
Lcin_3337
Conjugative transfer protein TraB.
 
     0.835
traE
Type IV conjugative transfer system protein TraE.
 
     0.818
Lcin_3329
Conjugative transfer protein TraF.
 
   
 0.812
traW
Type-F conjugative transfer system protein.
 
     0.811
traC_2
F pilus assembly protein TraC.
 
     0.801
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.